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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01390g00031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 1338aa MW: 150407 Da PI: 6.9761 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.2e-07 | 770 | 813 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +WT+eE e ++++ +G++ Wk+ a ++g + + ++k+ w+ + Peaxi162Scf01390g00031.1 770 KRKWTEEEYEMVRKYHEVHGNK-WKALADELG--KHRFHVKDTWRRL 813 579*******************.********9..6788899888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF51445 | 1.9E-72 | 86 | 294 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.70 | 2.5E-97 | 88 | 291 | IPR013785 | Aldolase-type TIM barrel |
Pfam | PF16499 | 1.1E-61 | 89 | 293 | IPR002241 | Glycoside hydrolase, family 27 |
CDD | cd14792 | 2.42E-110 | 89 | 292 | IPR002241 | Glycoside hydrolase, family 27 |
PRINTS | PR00740 | 2.0E-49 | 106 | 127 | IPR002241 | Glycoside hydrolase, family 27 |
PRINTS | PR00740 | 2.0E-49 | 141 | 158 | IPR002241 | Glycoside hydrolase, family 27 |
PRINTS | PR00740 | 2.0E-49 | 168 | 186 | IPR002241 | Glycoside hydrolase, family 27 |
PRINTS | PR00740 | 2.0E-49 | 233 | 252 | IPR002241 | Glycoside hydrolase, family 27 |
PRINTS | PR00740 | 2.0E-49 | 254 | 275 | IPR002241 | Glycoside hydrolase, family 27 |
SuperFamily | SSF51011 | 3.6E-23 | 283 | 364 | No hit | No description |
Gene3D | G3DSA:2.60.40.1180 | 5.5E-25 | 292 | 363 | IPR013780 | Glycosyl hydrolase, all-beta |
SMART | SM00717 | 0.014 | 696 | 767 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-6 | 699 | 786 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.178 | 765 | 814 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.051 | 769 | 816 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.23E-8 | 770 | 831 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.1E-11 | 773 | 831 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-8 | 787 | 826 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.968 | 815 | 883 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.41 | 819 | 885 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-8 | 827 | 902 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.53E-5 | 863 | 938 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.758 | 885 | 938 | IPR017877 | Myb-like domain |
SMART | SM00717 | 16 | 889 | 940 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:3.20.20.70 | 2.2E-107 | 997 | 1240 | IPR013785 | Aldolase-type TIM barrel |
SuperFamily | SSF51445 | 5.97E-88 | 998 | 1246 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF16499 | 4.7E-46 | 1004 | 1133 | IPR002241 | Glycoside hydrolase, family 27 |
CDD | cd14792 | 1.66E-131 | 1005 | 1246 | IPR002241 | Glycoside hydrolase, family 27 |
PROSITE pattern | PS00512 | 0 | 1040 | 1056 | IPR000111 | Glycoside hydrolase family 27/36, conserved site |
Pfam | PF16499 | 1.7E-36 | 1149 | 1286 | IPR002241 | Glycoside hydrolase, family 27 |
Gene3D | G3DSA:2.60.40.1180 | 2.1E-35 | 1241 | 1337 | IPR013780 | Glycosyl hydrolase, all-beta |
SuperFamily | SSF51011 | 5.52E-28 | 1241 | 1335 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0009505 | Cellular Component | plant-type cell wall | ||||
GO:0048046 | Cellular Component | apoplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Sequence ? help Back to Top |
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Protein Sequence Length: 1338 aa Download sequence Send to blast |
FCSKLPEKPQ DEAINFDTTT MVLLVFVFGY NHGSSATAAT ADCYFKFHCQ NADSQEPLEQ 60 WPWPNSSNGL MQWYTLGFLL LDTNTSILGN MVPKGSTFPS GIKALADYVH NKGLKLGIYS 120 DAGTQTCSKE MPGSLGHEEQ DAKTFASWGV DYLKYDNCNN ENRSPRERYP TMSKALQNSG 180 RAIFYSLCEW GDDDPATWAS SVGNSWRTTG DISDNWDSMT SRADQNDKWA SYAGPGGWND 240 PDMLEVGNGG MTTAEYRSHF SIWALAKAPL IIGCDIRSMD ETTKEILSNK EVWAGPLSGK 300 RVAVVLWNRG SSKADITAYW SDIGLDSSTV VDARDLWSHS TKGSVKGQIS AGIESHDCKI 360 MVIGDEKVGM LRKEKKKSKK NNKNADISGL GMTMADAAET RKDSVKAEIE TKPTGGSDDR 420 DIKKKKKRED GTHPDKSNKD SDESVAKCVE KKKHKKLKRS HQDEQQIILD APMNTKTVAH 480 ASARERGDSE KVIKTLSEVS GGNAVEEIRR KKKSKKSNKH AVEGDLSLEE KKLCVGKGKK 540 ERDKVNMETK AAGESDVCDI KKNKEREGEK HPGKSTKDSD KDDLGSVEKK KRKKLKKSCR 600 DESETMHSIE DEQEAIVAKV NRGDISSTVK EIEEQSKTDT GKIRKKKKAT IGHSSEDPTH 660 EKSEKKVRFS GHVEIFPSSS DPSDEKHETE EENLLRGKRF STLEDEIVKE AVHKYIEMHN 720 LGEEGLEMIL NSRSHPELKG CWKEIGSAIP YRPYTSIYYR AQVLFRRSEK RKWTEEEYEM 780 VRKYHEVHGN KWKALADELG KHRFHVKDTW RRLKLTNRNK GQWTQEEYQT LFDLVNTDLR 840 LKLSEEKKSK HGMLRDNIAW TAISGNLSTR TDANCCLKWY DQLTSPMVSK GEWADTDDYR 900 LIDALFELDA SCIEDVDWDN LVDHRPGELC RKRWNQMVLH IGQYVNKSFS EQVEVLAKRY 960 RPELVEVREA WDTRPQPRQL IATSNSTAKM LILRNLLSNG LGQTPQMGWN SWNHFGCYID 1020 EKMIRETADA MVYTGLSSLG YEYINLDDCW AELNRDSQGN MVPKGSTFPS GIKALADYVH 1080 NKGLKLGIYS DAGTQTCSKE MPGSLGHEEQ DAKTFPSWGV DYLKYDNCNN ENRSPRERGD 1140 DNPATWASSV GNSWRTTGDI SDNWDSMTSR ADQNDKWASN AGPGGWNDPD MLEDGNGGMT 1200 TAEYRSHFSV WALAKAPLII GCDIRSMDET TKEILSNKEV IAVNQDKLGV QGKKVKSDSG 1260 LEVWAGPLSG KRVAVVLWNR GSSKADITAY WSDIGLDSST VVDARDLWSH STKGSIKGQI 1320 SASIESHDCK MYVLTPKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1uas_A | 0.0 | 89 | 1336 | 1 | 361 | alpha-galactosidase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 587 | 594 | EKKKRKKL |
2 | 588 | 596 | KKKRKKLKK |
3 | 589 | 593 | KKRKK |
4 | 765 | 771 | RRSEKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY374437 | 0.0 | AY374437.1 Petunia x hybrida alpha-galactosidase mRNA, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1029 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-118 | MYB_related family protein |